Files: directory re-index invalidates an open tus destination after a sibling Note write #627
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opened 2026-10-01 10:53:55 +00:00 by kayg
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wip/editreg-1132
wip/editorrail3-1113
wip/editorrail2-1113
wip/editorrail-1113
wip/e2e-b2-1071
wip/e2e-b-1071
wip/draw4-1101
wip/draw3-1101
wip/draw2-1101
wip/draw-1101
wip/directory-1199-r
wip/directory-1199
wip/delete-1119
wip/collabrev-1197
wip/collabloss-1197
wip/cards2-1083
wip/cards-1083
wip/canvas-visual
wip/canvasvis2-976
wip/calhdr-1112
wip/calcards-1115
wip/browserfix
wip/blocks-1125
wip/allday-1107
wip/agenda-decks
wip/agenda-1086
wip/adv7c-1105
wip/txentry-1198
wip/trayicons2-1095
wip/trayicons-1095
wip/tagperf-1186
wip/sidebar3-1094
wip/rev2-webperf
wip/rev2-money-ident
job/adv-1202
wip/restyle-notes
wip/previewcard-1098
wip/palette2-1123
wip/palette-1093
wip/onboard2-1141
wip/onboard-1141.aborted-early
wip/onboard-1141
wip/nlpchip-1127
wip/morph-1104
wip/merge-round-7c5
wip/merge-round-7c4
job/notifloop-1194
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wip/merge-round-7c2
wip/merge-round-7c
wip/mchrome-1084
wip/mailghost2-1094
wip/mailghost-1094
wip/kbpreview2-1118
wip/kbpreview-1118
wip/kanban-1092
wip/importhang-1121
wip/hiderev-1153
wip/hide4-1153
wip/hide3-1153
wip/hide2-1153
wip/hide-1153
job/collabloss-1197
job/onboard-1141
job/hide-1153
job/perf-1124
job/perf2-1124
job/tocrail-1191
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job/segmented-1200
wip/notifloop-1194
job/tagperf-1186
wip/segmented-1200
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job/merge30
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wip/cards2-1179
wip/cards-1179
wip/tocrail-1191
wip/tagdnd-1187
wip/restyle-files
wip/perf-1124
wip/merge30j
job/restyle-notes
job/wizchoices-1140
wip/wizchoices-1140
wip/restyle-1190
job/moneyfmt-1180
job/txentry-1198
wip/moneyfmt2-1180
wip/moneyfmt-1180-r
wip/moneyfmt-1180
job/pillglass-1189
job/flags-1181
wip/flags-1181
job/restyle-1190
job/restyle-mailmoney
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site/website
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wip/wizardrev-1140
wip/wizard5-1140
wip/wizard4-1140
wip/wizard3-1140
wip/wizard2-1140
wip/wizard-1140
wip/pillglass-1189
wip/settingsreg-1195
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wip/merge29j
wip/fu-1171
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wip/fu-1166
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wip/merge28j
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wip/blockpill2-1152
wip/blockpill-1152
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wip/font-1150
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wip/minimonth-1149
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wip/perflint-1133
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kayg/calternal#627
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The full production Calendar e2e stops at calendar.mjs:1117 when its real tus replacement of the Daily note returns 412 instead of 201:
This reproduces on the #549 Round 4 server (
419926805), after the Composer snapshot ACK regression is fixed. The request sends no If-Match. This response comes from the tus destination guard, rather than the Journal ETag guard or Notes room epoch code. The same full Calendar failure was already recorded before Round 4.A bounded Rust reproduction opens a tus replacement of Notes/day.md, writes an unrelated Notes/other.md, then runs
index::recordfor Notes before its final PATCH. The parent directory inode and target bytes are unchanged. This returns 412 instead of 204. Without that re-index step, the early Round 4 parent-mtime fix passed; it did not fix the real full flow.Source evidence: Files
prepare_index_writegenerates a new directory item ID when the full fingerprint changes. The final upload looks up its captured parent ID, which can then be absent. A directory child write changes the directory change token. Keep stale-path and replacement protection intact when fixing this. The current FileFingerprint contains device/inode/size/mtime; it does not carry birth time, so simply retaining directory IDs by device/inode is insufficient for recreated directories.The narrow Round 4 parent-mtime exception was reverted after this finding. No existing e2e expectation was changed. This issue tracks the remaining pre-existing Calendar fixture stop and the directory identity contract. Preserve target content/hash preconditions, grants, directory replacement rejection and follow-parent rename behavior. Add a regression with a directory re-index between tus POST and PATCH.
Starting #631 and #627 on branch job/files-631, based on
687ff70313(origin/dev). I am tracing Tags Markdown projection failures and Files directory identity changes during tus uploads, then I will add the requested regressions and run the crate gates plus the adversarial and Calendar e2e checks.The identity churn is confirmed:
prepare_index_writereuses a directory item ID only when every fingerprint field (including size and mtime) matches. A child-entry change therefore mints a new ID and invalidates the tus upload's captured parent ID. I am adding persisted parent-directory fingerprint evidence: same-inode directory changes retain identity only when the parent token is unchanged; a changed parent token is replacement evidence. The existing full fingerprint check remains the stale-path guard.Fix committed locally in
970820261. Reproduction: a tus POST captures the folder ID, a sibling file write changes the folder fingerprint, and reconcile previously minted a new ID, so PATCH rejected the upload. Directory rows now save the parent fingerprint; same-inode directories keep the ID only when that parent token is unchanged. Tests cover POST/re-index/PATCH (204), actual directory replacement (412), and simulated inode reuse with changed parent evidence (412). Migration 0019 adds the parent token columns. Full crate suite had 148 passing tests and one stale expected migration count; the focused migration test passes after updating its count to 19. Final gates and live probes remain.#627 final report
Fixed Files directory identity across child writes. Directory rows now store the fingerprint of the direct parent. If a directory's own fingerprint changes, Files preserves its ID only when device/inode still match and the saved parent fingerprint is unchanged. A changed parent fingerprint in that case is replacement evidence. This keeps tus POST/PATCH stable across re-index while retaining replacement rejection, stale-path checks, grants, target content/hash preconditions, and parent-rename behavior.
Added migration 0019 and regression tests for POST → sibling write → re-index → PATCH 204, real directory replacement → PATCH 412, and simulated inode reuse.
origin/devhad migrations through 0018; the one merge attempt reportedAlready up to date.Files gates passed:
The cross-user matrix passed: 335 operations classified, 159 replayed, 733 A-ID comparisons, and 0 denial failures across 97 Job/Mail/quota checks.
calendar.mjspassed beyond line 1117, then failed at line 1401 in the composer snapshot assertion:the send carries the snapshot: 01:20 nFrozen snapshot. No Calendar UI code changed in this job. The #631 restore assertion also returned 200; the same probe later found the already-open #623 stale Task projection, which I reported on #623.The local debug upload profile ran under one-minute load 26.77. It measured 50 serial uploads at p50/p95 283.08/3039.73 ms and a 16-upload burst at 5724.78/8084.86 ms, with 444096512 bytes peak RSS. The existing
files.entriesread baseline is 1.8/3.1 ms and is not a comparable tus-write baseline.Head:
0122162b0126f7f7518468d1c6a3a3c54d78e26f. The final commit after gates changes documentation comments only.Additional #627 decision, now documented in
files/src/index.rsand migration 0019: legacy directory rows have no saved parent fingerprint. If the directory's target fingerprint has changed before its first refreshed Index write, Files assigns a new ID because device/inode alone cannot prove continuity. Stable legacy rows receive the parent token on that write; later child writes preserve the ID under the parent-token rule.Updated head:
1752147b9f782acdb94b1df1ebbeb897430a34fd. This last commit changes documentation only; the final gates still apply to the same behavior.Deep-link audit evidence for this issue: file and folder routes use
/f/<item-id>inapps/web/src/routes/f/[id]/+page.svelte:2-10. The route identity is stable in the URL, but the directory ID changes after child writes as this issue records. A copied folder link can therefore stop identifying the same folder. This also breaks the CLAUDE.md Deep links rule to use stable identities that survive writes and renames. Regression idea: copy a folder link, add or rename a child, then open the old link and verify that the same folder opens.Starting #627 on
job/dirid-627, base440e19dce23040ac8ebaae88f0469b6535b1afcb. Read the issue and all six current comments. Tracing directory continuity separately from mutable content fingerprints; the prior parent-token proposal can invalidate identities on sibling changes and upgrade. No pushes or deployments. The verification policy defers full Calendar e2e and adversarial matrices to the merge round.Finding: directory size/mtime are mutable content evidence, not continuity evidence; using the parent fingerprint also lets an unrelated sibling change invalidate identity. The implementation reads Linux STATX_BTIME from the safely opened directory and saves device/inode/birth evidence in Files migration 0019. Reads and reconciliation use the same directory identity rule; file content/hash checks retain their existing full fingerprint. Existing IDs adopt missing birth evidence on upgrade with matching device/inode. This unavoidable upgrade assumption and the conservative no-birth-time fallback are documented in DESIGN §26 and the Index module. Added router regressions for tus re-index, 100 child writes, pins, Share resolution, restart, rename/move, actual replacement, simulated inode reuse and a populated 0018 upgrade. Compiling the first focused test run now.
Filesystem evidence committed in
56be70c528545a459949b17aa9d7c166c689a30eafter the calternal-fs gates passed. The local filesystem provides directory birth time; the real Root regression confirms that it survives child writes and rename and changes on recreation. Gates: cargo fmt --check exited 0 with no output; calternal-fs Clippy with -D warnings passed; unit tests: 52 passed; storage integration tests: 42 passed. The Files gates are running now.Files Clippy was interrupted by shared compiler-cache infrastructure before reaching the Files crate. Verbatim error:
sccache: error: Failed to create temp dirandNo such file or directory (os error 2)under another job’s deletedauthfix/target/tmp. No source diagnostic was reported. Bypassing the shared cache withRUSTC_WRAPPER=for this job and rerunning the interrupted Files check, followed by the one Files crate test run. The passing filesystem gates remain valid.Files crate gates: Clippy passes. The suite reports 149 passed, 1 failed, 1 ignored. All four #627 regressions pass. The existing atomic-write/reconcile storm hit its unchanged 300-second deadline at lib.rs:5119 (
Elapsed(())); a writer then reportedentry not foundat lib.rs:5093 during cancellation/cleanup. Running that one test alone once to distinguish repeatable failure from shared-host contention. No existing deadline or assertion has been changed.#627 report
Built: separate directory identity from mutable content fingerprints. Persist Linux directory birth time with device/inode; use it for Index writes and live identity checks. Carry creation evidence through Trash/restore. Retain file content/hash preconditions, grants, pending namespace/install guards and follow-parent rename.
Files: crates/calternal-fs/src/{root.rs,lib.rs}; crates/plugins/files/src/{index.rs,lib.rs,tests/directory_identity.rs}; crates/plugins/files/migrations/0019_directory_birth.sql; docs/DESIGN.md §26.
Decisions: use STATX_BTIME from the same opened inode. Upgrade adopts missing creation evidence for matching device/inode and keeps existing IDs. Legacy rows cannot prove pre-upgrade inode reuse. Without filesystem birth time, retain conservative full-fingerprint validation rather than grant access to an ambiguous replacement. The two added SQL columns reduce batches to 56 rows to preserve the historical bind limit. Only the existing applied-migration maximum assertion changes from 18 to 19, because #627 adds migration 0019; no HTTP or content expectation changes.
UX gaps closed: folder Copy link resolver, sidebar pin resolver, Share access and open tus destination no longer fail on child writes on birth-time-capable filesystems. Tests cover 100 children, restart, rename/move, true replacement, simulated inode reuse and populated migration-0018 upgrade.
Known gaps / UX gaps left: filesystems without STATX_BTIME retain the conservative guard, so child changes can still invalidate folder IDs there. Legacy inode reuse before token adoption cannot be distinguished without historical creation evidence. Browser rendering is unchanged; the production browser walk remains for the merge round.
For the merge round:
cd apps/web && bun run test:e2e:calendarmust pass the tus Daily note replacement at calendar.mjs:1117 and complete the suite. Runtests/adversarial/run-split.shonce on the combined branch to verify XUser/authz/robustness matrices and replacement/grant isolation. Walk/f/<item-id>after 100 child writes, restart and rename and verify the real not-found state after delete/recreate. Full browser suites, adversarial matrices, release/staging/Mac checks and performance measurements were deferred under the 2026-10-02 verification policy.Head:
3159d5d484f0fb22d7d5657b30b7414374f26255onjob/dirid-627. Fetched and mergedorigin/devonce (c4faf184df726a9375ae0c13bdfb6018ac2cf57e) before final gates. Migration 0019 was free at that point. Atomic commits: DESIGN contract, FS evidence, nullable schema, then Files identity and router regressions. No push, deploy or issue close.Gate output (verbatim excerpts):
cargo fmt --check: no output, exit 0.cargo clippy -p calternal-fs --all-targets -- -D warningscargo test -p calternal-fscargo clippy -p calternal-plugin-files --all-targets -- -D warningscargo test -p calternal-plugin-files -- --test-threads=2Gate caveat: the original Files suite is not green. Its unchanged storm test timed out at 300 seconds, then a writer reported entry not found during cancellation/cleanup. Shared-host contention is a hypothesis; the isolated retry result follows. The shared sccache also failed during an initial Clippy invocation because its temporary directory belonged to another deleted worktree; the final Clippy passed with RUSTC_WRAPPER unset. A new regression test borrow mismatch was fixed before final Clippy. Existing HTTP/content assertions and storm deadline are unchanged.
Isolated retry:
cargo test -p calternal-plugin-files internal_temp_paths_never_enter_index_during_atomic_write_reconcile_storm -- --test-threads=1The isolated retry also hit the unchanged deadline, with no additional assertion/error. Host load during this retry:
load average: 62.59, 63.00, 70.15. This is recorded as an unresolved timing gate, not a passing suite. For the merge round, run the same focused command to prove 1,000 atomic writes, four scans and watcher adoption complete within the existing deadline. No further retries or full suite repeats were run.Cleanup:
cargo cleanoutput:No web build output existed. Re-read the changed module/function comments and checked the final diff. Worktree is clean.
Resuming #627 on job/dirid-627, HEAD
796523a62. The surviving worktree contains an in-progress merge of origin/job/merge-round-7a at61222f456with working resolutions in four files; checking these before completing it. Migration is moved to 0023 as requested, keeping deployed 7a migrations 0019 and 0020.Fetch is currently blocked by a shared repository ref:
fatal: bad object refs/heads/job/moneyfu-984. A targeted fetch with HEAD negotiation fails with the same error. Cached origin/dev is4a871b383(already merged); cached 7a is the requested61222f456. I will continue the authorized merge with these objects and report this fetch limitation; I will not delete another job's ref.7a merge resolution is committed at
4ff17a880; directory birth evidence is migration 0023. Both nullable parent columns (deployed 0019) and folder reconcile migration 0020 remain. No migration 0021/0022 is added here; those numbers are reserved by the owner for round 7b.Review found an additional continuity bypass: child completion calls record_preserve on its parent. The preserve flag previously reused even a replaced folder's ID. Restricted that writer override to files; folders always require device/inode/birth continuity. The replacement regression now invokes the actual refresh_parent path and retains all original 404/412/new-ID expectations. Updated stale parent-fingerprint comments from 7a; its existing test assertions are unchanged. Upgrade regression now starts from the deployed 0020 schema and checks the current link before lazy adoption.
The new rename/PATCH race passes all 32 rounds. The new replacement/PATCH race found a test-fixture cleanup error: it used the Files Trash API to create Index rows, then called Root::empty_trash to remove only bytes. The next cycle reused the Trash name while the old primary-key row remained, so the API returned 500. This mixes filesystem-only cleanup with API-managed Security state; it is not the production empty-Trash path. Changed only the new test cleanup to POST /trash/empty, which removes both. No existing HTTP expectation changed. The corrected focused regression will run before final gates.
The fetch limitation is resolved: an isolated Git ref namespace fetched directly into the shared object store without deleting or editing another job's broken ref. Current remote dev is
4a871b383and 7a is61222f456; both merges reportAlready up to date.Identity fix committed at
5bdaf8607. Files suite:test result: FAILED. 161 passed; 2 failed; 2 ignored; 0 measured; 0 filtered out; finished in 479.52s. All original #627 regressions and the new 32-round rename race passed. The new replacement fixture cleanup is corrected; the focused identity test group is rebuilding now.The other failure is the unchanged atomic-write/reconcile storm:
writes, reconcile scans, and watcher adoption complete within five minutes: Elapsed(()), followed byatomic write 795 failed: entry not foundduring cancellation/cleanup. The prior run on this branch recorded the same sequence at write 384 under load 62.59. Current shared-host one-minute load was 32.06 after the suite. No deadline or existing assertion was changed; the suite remains an unresolved timing gate. No full-suite retry loop will run.The 10,000-cycle campaign is running under flock on the perf VM HDD (ext4 /dev/sda1). Its case and production code are unchanged by the local replacement-fixture cleanup. The locked run records load average and follows the stress with the inode-reuse and tus POST/re-index/PATCH regressions.
Corrected focused identity group passes:
This includes 32 concurrent rename/PATCH rounds and 32 Trash/recreate/PATCH rounds. The fixture uses POST /trash/empty; the prior 500 no longer occurs. Existing ID, 404, 412, target-byte and schema expectations remain intact except the requested migration maximum 23. The HDD campaign has passed its first 1,000 cycles (3,000 child operations with checks after every operation). Files and filesystem final Clippy/tests are still running. The full Files storm timing gate remains unresolved as already reported.
Head
92416e3334. Atomic follow-ups:5bdaf8607fixes folder parent refresh continuity;92416e333adds the two 32-round namespace races, the 10,000-cycle stress case and its command in the existing bench profile.All final scoped checks pass: cargo fmt --check (no output, exit 0), Files and filesystem Clippy, six focused identity tests, and the full filesystem suite. The full Files suite's existing storm timing gate remains unresolved; its one run is reported above. No full-suite loop ran. The remote HDD campaign has passed 4,000 cycles (12,000 operations plus per-operation owner/Share/isolation checks) and continues under flock. No latency benchmark was run: this is a correctness run with a debug test binary under the current verification policy.
cargo clippy -p calternal-plugin-files --all-targets -- -D warningscargo test -p calternal-plugin-files directory_identity -- --test-threads=3cargo clippy -p calternal-fs --all-targets -- -D warningscargo test -p calternal-fs -- --test-threads=3HDD correctness campaign: 5,000 child write/rename/delete cycles passed in 1665.449966526s. This is 15,000 child operations and re-index passes, with owner link, Share link and unrelated-User denial checks after each operation. The same folder ID remains throughout. The run holds /root/perf.lock and uses ext4 /dev/sda1; recorded start load averages were 0.06, 0.01, 0.00.
Head is now
c544b2dd93. This final documentation commit records the already-tested parent-refresh guarantee in DESIGN §26; runtime and test code are identical to92416e333, whose scoped passing outputs are above. Local cargo clean completed:Removed 9155 files, 3.5GiB total. No web build output existed. Remote campaign and its inode-reuse/tus follow-ups continue; final report follows completion.Finished the #627 folder identity fix on
job/dirid-627. Head:c544b2dd934f535ecd0cb833b29ffa5ee85bf4ee. The last commit changes DESIGN text only; runtime and test code match the passing scoped checks at92416e333.Built: directory IDs use device, inode and filesystem birth time, separately from mutable size/mtime. Child writes and re-index keep the current ID. Upgrade adopts birth evidence lazily without changing current IDs. A replacement, including a reused inode with different birth evidence, gets a new ID. Child completion now checks folder continuity even when its file writer uses the preserve flag. File content/hash preconditions, grants and follow-parent rename remain intact. Trash/restore carry birth evidence.
Merged origin/dev (
4a871b383) and requested 7a (61222f456). A broken shared ref initially blocked fetch; an isolated ref namespace fetched into the existing object store without changing another job's ref. Both remote SHAs were verified before final checks. Migration 0023 follows deployed 7a 0019/0020; 0021 is reserved for noext-851 and 0022 for webdav-lock-476. Old migration SQL stays unchanged. No dropmd-719 identity approach was used.Files:
Verification: six focused identity regressions pass. They cover the populated 7a upgrade, sibling write between tus POST and PATCH (204), folder links/pins/Share/restart/rename/move, real replacement and simulated inode reuse. Added 32 concurrent rename/PATCH rounds and 32 concurrent Trash/recreate/PATCH rounds. The new replacement fixture initially mixed API Trash with filesystem-only cleanup and returned 500 on a duplicate fixture key; it now uses POST /trash/empty and passes. No existing HTTP/content expectation changed. The migration maximum changes to the requested 23.
On the perf VM HDD, the locally built debug test binary passed 10,000 child write/rename/delete cycles: 30,000 operations and re-index passes, with owner link resolution, Share link resolution and unrelated-User denial checked after each operation (90,000 resolver checks). The folder ID stayed unchanged. The run held
/root/perf.lock; temporary data was on ext4/dev/sda1. Start load averages: 0.06, 0.01, 0.00. The inode-reuse/replacement and tus sibling-write/re-index/PATCH regressions then passed on that VM. The lock is released and the remote test files are removed. This was a correctness run, not a release latency benchmark; latency/CPU/RSS profile measurements remain outside this non-performance job under the verification policy.Gate output (verbatim excerpts):
cargo fmt --checkandnode --check bench/files-directory-identity-627.mjsproduced no output and exited 0.cargo clippy -p calternal-plugin-files --all-targets -- -D warningscargo test -p calternal-plugin-files directory_identity -- --test-threads=3cargo clippy -p calternal-fs --all-targets -- -D warningscargo test -p calternal-fs -- --test-threads=3HDD focused correctness campaign:
Unresolved Files suite gate: the one full crate run reported:
One failure was the new fixture cleanup error, now fixed and verified by the focused group. The other is the existing storm's unchanged five-minute deadline:
The writer error followed timeout cancellation/cleanup. The prior branch run recorded the same sequence. The shared-host one-minute load after this run was 32.06. This remains an unresolved timing gate, not a passing full suite. No deadline or existing assertion was changed and no full-suite retry loop ran.
Decisions: preserve a file ID only after its existing content checks; the preserve flag cannot bypass folder creation evidence. Retain deployed migration SQL and unused parent columns. Use nullable birth evidence and matching device/inode for legacy adoption so upgrade keeps CURRENT IDs. Without filesystem birth time, keep the conservative full-fingerprint guard. The Rust campaign uses a bounded disposable Home and copies its binary to the VM instead of building there. These choices are documented in module comments, the migration and DESIGN §26.
UX gaps closed: folder Copy link, pin resolution, Share access and open tus destinations survive child writes, re-index, restart and recorded rename/move. A replacement folder cannot inherit a grant or an old upload through parent refresh. Both namespace race orders preserve the intended destination.
Known gaps / UX gaps left: filesystems without birth time can still lose stable folder IDs after child changes; a durable creation token is future work in DESIGN §26. Legacy inode reuse before birth adoption cannot be distinguished. The original storm timing gate remains open. No UI rendering changed; browser evidence is for the merge round.
For the merge round:
cd apps/web && bun run test:e2e:calendar: prove the real Calendar tus Daily note replacement passes calendar.mjs:1117 and the suite completes.tests/adversarial/run-split.sh: run the combined XUser/authz/robustness matrices, including replacement/grant isolation.cargo test -p calternal-plugin-files internal_temp_paths_never_enter_index_during_atomic_write_reconcile_storm -- --test-threads=1: prove the original 1,000-write/four-scan/watcher test finishes within its unchanged deadline./f/<item-id>and Share after child edits, restart and rename; verify not-found after delete/recreate. Full web, server integration, release/staging and Mac checks stay with that round under the verification policy.Cleanup output:
No web build output remained. Re-read changed doc comments and checked the final diff. The worktree is clean. No push, deploy, issue close or promotion merge.
Coordination from #857: folder identity code is untouched. Notes retains an Index identity map linked to existing Files item IDs. A small batched hook in files/src/index.rs attaches already-indexed Notes to newly assigned Files IDs; no changes to folder ID generation or rename tracking.
#857 integration is committed at
54456bd10b5c10abee4b9b90158aba3e6f440b2a. Files Markdown records bind retained Note IDs to Files item IDs inside the existing write transaction; the predicate requires file MIME and a visible Markdown path, so.mddirectories cannot claim old Note IDs. Folder move responses adopt Notes after Files tracking commits. Folder ID generation/rename tracking is unchanged. The focused regression passes folder move + replay and replacement of a stale Note with a.mddirectory.IndexWrite::is_note_filereuses the allocation-free path predicate shared withvisible_markdown_path; this is the only small guard refactor in Files lib.